Thursday, June 24, 2021

Gene Transfer Mechanisms in Bacteria

 Transformation, conjugation and transduction are the methods of horizontal gene transfer in bacteria. 

Conjugation:  orderly, deliberate transfer of DNA from one cell to another; programmed by specialized genes and organelles.

Transformation:  uptake of environmental DNA into a cell.

Transduction:  transfer of DNA from one cell to another mediated by a virus.

 



Sunday, May 23, 2021

Mucormycosis

Mucormycosis is a fungal infection caused by molds (mucormycetes). These fungi are present in soil and in decaying organic matter e.g., compost, rotten woods, dungs etc. Spores of these fungi are present throughout in the environment. When any person with health issues (e.g., diabetes etc.) and weak immunity come in contact with fungal spores they get mucormycosis.

Types of mucormycosis

1.    Rhinocerebral (sinus and brain) mucormycosis: this infection spread to the brain from sinuses and most common in persons with uncontrolled diabetes and in persons who have had a kidney transplant.

Symptoms- One-sided facial swelling, headache, nasal or sinus congestion, black lesions on nasal bridge or upper inside of mouth that quickly become more severe, fever.

2.     Pulmonary (lung) mucormycosis: this is the most common infection in cancer patient and in person who have had organ transplant. 

Symptoms- Fever, Cough, Chest pain, shortness of breath.

3.   Gastrointestinal mucormycosis: this infection is common in lower age group people who have weak immunity.

Symptoms- Abdominal pain, nausea and vomiting, gastrointestinal bleeding.

4.   Cutaneous (skin) mucormycosis: spores enter in the body through skin. When any break in the skin occurs (by injury etc.) spores of fungi get entered in the body through broken skin.

Symptoms- Blisters or ulcers, infected area may turn black, pain excessive redness, swelling around the wound.

5.   Disseminated mucormycosis: in this infection spores transport through bloodstream to different organs. Brain is the commonly affected part; it can also affect spleen and heart.

Symptoms- Mental status changes, coma.

Causative agent:

Rhizopus species, Mucor species, Rhizomucor species, Syncephalastrum species, Cunninghamella bertholletiaeApophysomyces species, and Lichtheimia (formerly Absidia) species.

Treatment

Mucormycosis is treated by antifungal medicine like amphotericin B (intravenous), posaconazole (intravenous/oral), or isavuconazole (intravenous/oral). Often, mucormycosis needed surgery to remove the infected part.

 

Thursday, May 13, 2021

2-Deoxy-D-glucose (2-DG): A Weapon Against COVID-19

 

Nowadays, everyone is talking about 2-deoxy-D-glucose (2-DG). Institute of Nuclear Medicine and Allied Sciences (INMAS), a lab of Defense Research and Development Organization (DRDO) has developed the therapeutic application of 2-DG against COVID-19 in collaboration with its industry partner Dr. Reddy’s Laboratories (DRL). It is being claimed that 2-DG will help COVID-19 patients in fast recovery. The results of its clinical trial were very positive and encouraging therefor, DCGI approves anti-COVID drug developed by DRDO for emergency use.


2-deoxy-D-glucose (2-DG) is the analog of glucose in which 2-OH is replaced by –H. As we know that glucose is the main source of energy in living beings and generate energy by breakdown of it. Glucose enters in energy producing metabolic pathway through glycolysis. In first step of glycolysis glucose is converted into glucose-6-phosphate (G-6-P) by hexokinase enzyme.


When 2-DG is presented in cells it phosphorylated by hexokinase to 2-deoxy-D-glucose-6-phosphate (2-DG-P). 2-DG-P is not recognized by glycolytic enzymes and further metabolism of glucose cannot occur. We can say that 2-DG is a glycolytic inhibitor. Consequently, energy (ATP) production is stopped because end product of glycolysis (pyruvic acid) is the fuel for further energy producing pathways. Therefore, accumulation of 2-DG-P and depletion of ATP occur. In the same way it acts on COVID-19 infected cells. It accumulates in the virus infected cells and prevents virus growth by stopping viral synthesis and energy production.

Some images are attached here released by Press Information Bureau, Government of India.


 



 

Sunday, February 21, 2021

Interactions that contribute to protein folding

Protein structure is stabilized by following interactions:

Covalent bond: Covalent bonds are formed when two atoms share equal electrons. Amino acids linked with each other through covalent peptide bonds and from dipeptide, tripeptide, oligopeptide and polypeptide. Covalent bonds are important to maintain the primary structure of protein. 

 Covalent disulphide bridges (-S-S-): Sulphur containing amino acid (cysteines) are involved in forming covalent disulphide bonds and play a pivotal role to maintain the tertiary structure of proteins.

Electrostatic interaction: This type of interactions is occur between oppositely charged molecules. in protein electrostatic interaction occur due to side chains of amino acids. Generally electrostatic interactions are found in tertiary and quaternary structure of proteins, and these interactions occur through their oppositely charged side chains (e.g., lysine and aspartic acid).

Hydrogen bond: Hydrogen bonds formed between hydrogen and electronegative atoms e.g., oxygen and nitrogen. Hydrogen bonds are the main reason behind the great stability of secondary, tertiary and quaternary structure of proteins.

van der Waals bonds: When the force of attraction and repulsion are equal it is known as London dispersion forces; and weak interactions resulting from this dispersive force are known as van der Waals bonds. These bonds are important in maintaining the three-dimensional structure of protein.

Hydrophobic bonds: Side chains of non-polar amino acids like valine etc. are involved in hydrophobic interactions. This interaction helps to minimize the contact between water molecule and side chains of non-polar amino acids. This provide stability to protein structure and important in folding.

Co-ordinate bond: Such type of interaction occur because in only one atom share the pair of electrons which are involve in bonding. Coordinate bond is found in metalloprotein.

Real Time PCR and its Application in Plant Pathology-III

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